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  5. LOC_Os03g61220.1

LOC_Os03g61220.1


Description : DEAD box RNA helicase (RH3)


Gene families : OG_01_0004178 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004178_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g61220.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g61220.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_245
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_131


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0003724 RNA helicase activity ISM GOs from InterProScan
MF GO:0004386 helicase activity ISM GOs from InterProScan
MF GO:0005524 ATP binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001878 Znf_CCHC SMART 741 757
IPR001650 Helicase_C Pfam 339 445
IPR036875 Znf_CCHC_sf SUPERFAMILY 722 758
IPR001650 Helicase_C ProSiteProfiles 340 485
IPR014014 RNA_helicase_DEAD_Q_motif ProSiteProfiles 104 132
IPR012562 GUCT Pfam 532 632
IPR014001 Helicase_ATP-bd SMART 123 328
IPR027417 P-loop_NTPase Gene3D 332 522
IPR001650 Helicase_C SMART 365 445
IPR001878 Znf_CCHC Pfam 741 757
IPR027417 P-loop_NTPase Gene3D 106 315
IPR001878 Znf_CCHC ProSiteProfiles 742 757
IPR014001 Helicase_ATP-bd ProSiteProfiles 135 311
IPR027417 P-loop_NTPase SUPERFAMILY 181 466
IPR011545 DEAD/DEAH_box_helicase_dom Pfam 128 300

No CAZYmes available for this sequence

No external refs found!