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  5. LOC_Os03g61790.1

LOC_Os03g61790.1


Description : RNA cyclase family protein


Gene families : OG_01_0013485 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013485_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g61790.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g61790.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_60
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_38


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
CC GO:0005730 nucleolus ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
BP GO:0042254 ribosome biogenesis ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000228 RNA3'_term_phos_cyc PANTHER 1 376
IPR016443 RNA3'_term_phos_cyc_type_2 CDD 3 353
IPR020719 RNA3'_term_phos_cycl-like_CS ProSitePatterns 157 167
IPR037136 RNA3'_phos_cyclase_dom_sf Gene3D 10 354
IPR036553 RPTC_insert Gene3D 185 294
IPR013791 RNA3'-term_phos_cycl_insert Pfam 185 297
IPR013792 RNA3'P_cycl/enolpyr_Trfase_a/b SUPERFAMILY 10 231
IPR016443 RNA3'_term_phos_cyc_type_2 TIGRFAM 8 376
IPR023797 RNA3'_phos_cyclase_dom Pfam 10 350
IPR016443 RNA3'_term_phos_cyc_type_2 PANTHER 1 376

No CAZYmes available for this sequence

No external refs found!