LOC_Os03g63260.3

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0007629 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007629_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g63260.3
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g63260.3
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_166
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_173

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011990	TPR-like_helical_dom_sf	Gene3D	455	555
IPR011990	TPR-like_helical_dom_sf	Gene3D	335	454
IPR011990	TPR-like_helical_dom_sf	Gene3D	556	677
IPR011990	TPR-like_helical_dom_sf	Gene3D	173	324
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	372	402
IPR002885	Pentatricopeptide_rpt	Pfam	270	317
IPR002885	Pentatricopeptide_rpt	Pfam	503	552
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	102	136
IPR002885	Pentatricopeptide_rpt	TIGRFAM	405	438
IPR002885	Pentatricopeptide_rpt	TIGRFAM	542	575
IPR002885	Pentatricopeptide_rpt	TIGRFAM	274	307
IPR002885	Pentatricopeptide_rpt	TIGRFAM	73	102
IPR002885	Pentatricopeptide_rpt	TIGRFAM	506	540
IPR002885	Pentatricopeptide_rpt	Pfam	478	500
IPR002885	Pentatricopeptide_rpt	Pfam	73	102
IPR002885	Pentatricopeptide_rpt	Pfam	104	130
IPR002885	Pentatricopeptide_rpt	Pfam	135	158
IPR002885	Pentatricopeptide_rpt	Pfam	243	266
IPR002885	Pentatricopeptide_rpt	Pfam	215	234
IPR002885	Pentatricopeptide_rpt	Pfam	405	435
IPR002885	Pentatricopeptide_rpt	Pfam	376	401
IPR002885	Pentatricopeptide_rpt	Pfam	346	369
IPR011990	TPR-like_helical_dom_sf	Gene3D	5	172
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	403	437
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	504	538
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	271	305
IPR045215	PPR_prot_At1g15510	PANTHER	6	683

No CAZYmes available for this sequence

External Links

No external refs found!