1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os04g01480.1

LOC_Os04g01480.1


Description : zinc finger (CCCH-type) family protein


Gene families : OG_01_0003109 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003109_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g01480.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g01480.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_167
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_229


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
MF GO:0008173 RNA methyltransferase activity ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR010280 U5_MeTrfase_fam ProSiteProfiles 245 850
IPR010280 U5_MeTrfase_fam Pfam 743 786
IPR000571 Znf_CCCH ProSiteProfiles 51 84
IPR030390 MeTrfase_TrmA_AS ProSitePatterns 746 778
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 127 199
IPR029063 SAM-dependent_MTases_sf SUPERFAMILY 247 850
IPR045850 TRM2_met PANTHER 71 850
IPR035979 RBD_domain_sf SUPERFAMILY 130 202
IPR000571 Znf_CCCH Pfam 52 83
IPR025714 Methyltranfer_dom Pfam 534 597
IPR036855 Znf_CCCH_sf SUPERFAMILY 49 88

No CAZYmes available for this sequence

No external refs found!