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  5. LOC_Os04g04020.1

LOC_Os04g04020.1


Description : Sec23/Sec24 protein transport family protein


Gene families : OG_01_0002279 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002279_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g04020.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g04020.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_152
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_34


Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport ISM GOs from InterProScan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
CC GO:0030127 COPII vesicle coat ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012990 Sec23_24_beta_S Pfam 680 763
IPR006895 Znf_Sec23_Sec24 Pfam 364 401
IPR036465 vWFA_dom_sf SUPERFAMILY 438 677
IPR006900 Sec23/24_helical_dom Pfam 775 878
IPR036180 Gelsolin-like_dom_sf SUPERFAMILY 885 1030
IPR036465 vWFA_dom_sf Gene3D 440 677
IPR006896 Sec23/24_trunk_dom Pfam 438 674
IPR041742 Sec24-like_trunk_dom CDD 438 679
IPR029006 ADF-H/Gelsolin-like_dom_sf Gene3D 883 1010
IPR036174 Znf_Sec23_Sec24_sf SUPERFAMILY 351 437
IPR036175 Sec23/24_helical_dom_sf SUPERFAMILY 775 882

No CAZYmes available for this sequence

No external refs found!