LOC_Os04g09810.1

Description : Cytidine/deoxycytidylate deaminase family protein

Gene families : OG_01_0008510 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008510_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g09810.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g09810.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_80
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_231

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006766	vitamin metabolic process	None	Extended
BP	GO:0006767	water-soluble vitamin metabolic process	None	Extended
BP	GO:0006771	riboflavin metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0008835	diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	ISM	GOs from InterProScan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009110	vitamin biosynthetic process	None	Extended
BP	GO:0009231	riboflavin biosynthetic process	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	ISM	GOs from InterProScan
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	None	Extended
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
MF	GO:0019239	deaminase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042364	water-soluble vitamin biosynthetic process	None	Extended
BP	GO:0042726	flavin-containing compound metabolic process	None	Extended
BP	GO:0042727	flavin-containing compound biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR004794	Eubact_RibD	TIGRFAM	91	388
IPR016192	APOBEC/CMP_deaminase_Zn-bd	ProSitePatterns	133	171
IPR024072	DHFR-like_dom_sf	Gene3D	224	402
IPR024072	DHFR-like_dom_sf	SUPERFAMILY	259	394
IPR016193	Cytidine_deaminase-like	SUPERFAMILY	87	218
IPR002125	CMP_dCMP_dom	Pfam	86	183
IPR002125	CMP_dCMP_dom	ProSiteProfiles	84	206

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os04g09810.1

Expression Profile

Co-expression Networks

Functional Annotation