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  5. LOC_Os04g13140.1

LOC_Os04g13140.1


Description : senescence-associated gene 12


Gene families : OG_01_0004346 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004346_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g13140.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g13140.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_11
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_150


Type GO Term Name Evidence Source
BP GO:0006508 proteolysis ISM GOs from InterProScan
MF GO:0008234 cysteine-type peptidase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR025660 Pept_his_AS ProSitePatterns 290 300
IPR000169 Pept_cys_AS ProSitePatterns 147 158
IPR000668 Peptidase_C1A_C SMART 129 348
IPR025661 Pept_asp_AS ProSitePatterns 308 327
IPR013201 Prot_inhib_I29 SMART 40 98
IPR000668 Peptidase_C1A_C PRINTS 292 302
IPR000668 Peptidase_C1A_C PRINTS 308 314
IPR000668 Peptidase_C1A_C PRINTS 147 162
IPR038765 Papain-like_cys_pep_sf SUPERFAMILY 35 348
IPR013201 Prot_inhib_I29 Pfam 40 98
IPR000668 Peptidase_C1A_C Pfam 129 348
IPR039417 Peptidase_C1A_papain-like CDD 130 347

No CAZYmes available for this sequence

No external refs found!