LOC_Os04g16764.1

Description : chloroplast ribosomal protein S4

Gene families : OG_01_0019537 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0019537_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g16764.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g16764.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_139
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_79

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003735	structural constituent of ribosome	ISM	GOs from InterProScan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006412	translation	ISM	GOs from InterProScan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	ISM	GOs from InterProScan
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR005709	Ribosomal_uS4_bac-type	Hamap	1	199
IPR002942	S4_RNA-bd	SMART	89	152
IPR018079	Ribosomal_uS4_CS	ProSitePatterns	87	111
IPR002942	S4_RNA-bd	Pfam	89	136
IPR022801	Ribosomal_uS4	PANTHER	1	200
IPR001912	Ribosomal_uS4_N	Pfam	3	88
IPR005709	Ribosomal_uS4_bac-type	TIGRFAM	3	199
IPR002942	S4_RNA-bd	CDD	89	148
IPR036986	S4_RNA-bd_sf	Gene3D	88	184
IPR001912	Ribosomal_uS4_N	SMART	3	88

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os04g16764.1

Expression Profile

Co-expression Networks

Functional Annotation