LOC_Os04g20220.1

Description : Translation elongation factor EF1A/initiation factor IF2gamma family protein

Gene families : OG_01_0003372 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003372_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g20220.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g20220.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_198
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_34

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	ISM	GOs from InterProScan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR004160	Transl_elong_EFTu/EF1A_C	Pfam	421	537
IPR031157	G_TR_CS	ProSitePatterns	160	175
IPR004161	EFTu-like_2	Pfam	348	414
IPR000795	T_Tr_GTP-bd_dom	PRINTS	108	121
IPR000795	T_Tr_GTP-bd_dom	PRINTS	247	256
IPR000795	T_Tr_GTP-bd_dom	PRINTS	187	197
IPR000795	T_Tr_GTP-bd_dom	PRINTS	203	214
IPR009000	Transl_B-barrel_sf	SUPERFAMILY	327	420
IPR027417	P-loop_NTPase	Gene3D	84	328
IPR000795	T_Tr_GTP-bd_dom	ProSiteProfiles	104	333
IPR009001	Transl_elong_EF1A/Init_IF2_C	SUPERFAMILY	424	537
IPR027417	P-loop_NTPase	SUPERFAMILY	96	339
IPR000795	T_Tr_GTP-bd_dom	Pfam	104	306

No CAZYmes available for this sequence

External Links

No external refs found!