LOC_Os04g20560.1

Description : methyl-CPG-binding domain protein 13

Gene families : OG_01_0020322 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0020322_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g20560.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g20560.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_39
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_182

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR016177	DNA-bd_dom_sf	SUPERFAMILY	115	176
IPR038945	MBD13-like	PANTHER	31	363
IPR001739	Methyl_CpG_DNA-bd	ProSiteProfiles	115	187
IPR001739	Methyl_CpG_DNA-bd	ProSiteProfiles	189	269
IPR016177	DNA-bd_dom_sf	SUPERFAMILY	190	274
IPR016177	DNA-bd_dom_sf	SUPERFAMILY	27	114
IPR001739	Methyl_CpG_DNA-bd	Pfam	120	169
IPR001739	Methyl_CpG_DNA-bd	Pfam	36	104
IPR001739	Methyl_CpG_DNA-bd	ProSiteProfiles	35	105

No CAZYmes available for this sequence

External Links

No external refs found!