LOC_Os04g30770.1

Description : Glycosyl hydrolase family protein with chitinase insertion domain

Gene families : OG_01_0010748 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010748_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g30770.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g30770.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_25
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_60

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
MF	GO:0008061	chitin binding	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001223	Glyco_hydro18_cat	Pfam	44	389
IPR001223	Glyco_hydro18_cat	ProSiteProfiles	40	406
IPR029070	Chitinase_insertion_sf	Gene3D	284	360
IPR011583	Chitinase_II	SMART	41	389
IPR017853	Glycoside_hydrolase_SF	SUPERFAMILY	42	392
IPR029070	Chitinase_insertion_sf	SUPERFAMILY	285	360

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
GH18	296	480	2e-51	58	394

External Links

No external refs found!