LOC_Os04g32960.1

Description : TUDOR-SN protein 1

Gene families : OG_01_0008708 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008708_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g32960.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g32960.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_61
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_21

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
CC	GO:0016442	RISC complex	ISM	GOs from InterProScan
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031047	regulatory ncRNA-mediated gene silencing	ISM	GOs from InterProScan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
CC	GO:0031332	RNAi effector complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR035437	SNase_OB-fold_sf	SUPERFAMILY	10	153
IPR016685	Silence_cplx_Nase-comp_TudorSN	PIRSF	1	1033
IPR002999	Tudor	Pfam	830	905
IPR035437	SNase_OB-fold_sf	Gene3D	585	725
IPR016071	Staphylococal_nuclease_OB-fold	SMART	591	717
IPR016071	Staphylococal_nuclease_OB-fold	SMART	188	367
IPR016071	Staphylococal_nuclease_OB-fold	SMART	12	153
IPR016071	Staphylococal_nuclease_OB-fold	SMART	381	562
IPR035437	SNase_OB-fold_sf	SUPERFAMILY	586	719
IPR035437	SNase_OB-fold_sf	Gene3D	887	1017
IPR016071	Staphylococal_nuclease_OB-fold	ProSiteProfiles	381	562
IPR002999	Tudor	CDD	837	887
IPR002999	Tudor	SMART	832	893
IPR035437	SNase_OB-fold_sf	SUPERFAMILY	185	369
IPR035437	SNase_OB-fold_sf	SUPERFAMILY	378	565
IPR016071	Staphylococal_nuclease_OB-fold	ProSiteProfiles	591	717
IPR035437	SNase_OB-fold_sf	Gene3D	179	378
IPR016071	Staphylococal_nuclease_OB-fold	ProSiteProfiles	12	153
IPR035437	SNase_OB-fold_sf	SUPERFAMILY	869	1020
IPR002999	Tudor	ProSiteProfiles	833	895
IPR035437	SNase_OB-fold_sf	Gene3D	379	570
IPR035437	SNase_OB-fold_sf	Gene3D	13	156
IPR016071	Staphylococal_nuclease_OB-fold	Pfam	46	153
IPR016071	Staphylococal_nuclease_OB-fold	Pfam	620	716
IPR016071	Staphylococal_nuclease_OB-fold	Pfam	275	366
IPR016071	Staphylococal_nuclease_OB-fold	Pfam	413	558
IPR016071	Staphylococal_nuclease_OB-fold	ProSiteProfiles	188	367

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os04g32960.1

Expression Profile

Co-expression Networks

Functional Annotation