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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0014838 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014838_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g35305.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g35305.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_144 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 440 | 474 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 126 | 218 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 239 | 311 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 414 | 439 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 159 | 185 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 314 | 338 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 255 | 279 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 38 | 65 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 128 | 154 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 66 | 94 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 221 | 250 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 191 | 218 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 97 | 126 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 95 | 129 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 159 | 184 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 97 | 127 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 442 | 475 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 128 | 153 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 66 | 94 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 221 | 251 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 255 | 281 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 191 | 218 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 283 | 311 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 38 | 65 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 157 | 191 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 281 | 315 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 64 | 94 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 219 | 253 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 493 | 629 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 394 | 492 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 27 | 125 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 312 | 391 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 440 | 487 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 281 | 311 |
No CAZYmes available for this sequence
| No external refs found! |