LOC_Os04g35480.1

Description : Methylthiotransferase

Gene families : OG_01_0003003 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003003_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g35480.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g35480.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_350
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_20

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	ISM	GOs from InterProScan
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035596	methylthiotransferase activity	ISM	GOs from InterProScan
MF	GO:0035598	N6-threonylcarbomyladenosine methylthiotransferase activity	ISM	GOs from InterProScan
BP	GO:0035600	tRNA methylthiolation	ISM	GOs from InterProScan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0050497	alkylthioltransferase activity	None	Extended
MF	GO:0051536	iron-sulfur cluster binding	ISM	GOs from InterProScan
MF	GO:0051539	4 iron, 4 sulfur cluster binding	ISM	GOs from InterProScan
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR007197	rSAM	Pfam	198	370
IPR007197	rSAM	ProSiteProfiles	187	419
IPR013848	Methylthiotransferase_N	Pfam	60	138
IPR006466	MiaB-like_arc_euk	TIGRFAM	60	481
IPR005839	Methylthiotransferase	TIGRFAM	59	476
IPR006638	Elp3/MiaA/NifB-like_rSAM	SMART	191	411
IPR007197	rSAM	SFLD	130	403
IPR023404	rSAM_horseshoe	Gene3D	189	420
IPR002792	TRAM_dom	ProSiteProfiles	420	482
IPR020612	Methylthiotransferase_CS	ProSitePatterns	195	215
IPR038135	Methylthiotransferase_N_sf	Gene3D	59	178
IPR013848	Methylthiotransferase_N	ProSiteProfiles	58	166

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os04g35480.1

Expression Profile

Co-expression Networks

Functional Annotation