1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os04g40130.1

LOC_Os04g40130.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0015734 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015734_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g40130.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g40130.1 No neighbors in network
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_382


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 142 189
IPR002885 Pentatricopeptide_rpt Pfam 212 259
IPR002885 Pentatricopeptide_rpt Pfam 70 120
IPR002885 Pentatricopeptide_rpt Pfam 282 330
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 283 317
IPR002885 Pentatricopeptide_rpt TIGRFAM 355 388
IPR002885 Pentatricopeptide_rpt TIGRFAM 391 423
IPR002885 Pentatricopeptide_rpt TIGRFAM 320 353
IPR002885 Pentatricopeptide_rpt TIGRFAM 145 178
IPR002885 Pentatricopeptide_rpt TIGRFAM 109 139
IPR002885 Pentatricopeptide_rpt TIGRFAM 43 67
IPR002885 Pentatricopeptide_rpt TIGRFAM 73 107
IPR002885 Pentatricopeptide_rpt TIGRFAM 215 247
IPR002885 Pentatricopeptide_rpt TIGRFAM 250 283
IPR002885 Pentatricopeptide_rpt TIGRFAM 181 214
IPR002885 Pentatricopeptide_rpt TIGRFAM 285 318
IPR011990 TPR-like_helical_dom_sf Gene3D 294 453
IPR011990 TPR-like_helical_dom_sf Gene3D 195 293
IPR011990 TPR-like_helical_dom_sf Gene3D 86 194
IPR011990 TPR-like_helical_dom_sf Gene3D 22 85
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 353 387
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 107 141
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 71 105
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 213 247
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 178 212
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 248 282
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 143 177
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 388 422
IPR002885 Pentatricopeptide_rpt Pfam 340 397
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 318 352
IPR002885 Pentatricopeptide_rpt Pfam 43 68
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 40 70

No CAZYmes available for this sequence

No external refs found!