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  5. LOC_Os04g41120.1

LOC_Os04g41120.1


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0011014 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011014_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g41120.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g41120.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_330
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_32


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 281 315
IPR011990 TPR-like_helical_dom_sf Gene3D 358 578
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 382 416
IPR002885 Pentatricopeptide_rpt Pfam 456 481
IPR002885 Pentatricopeptide_rpt Pfam 185 210
IPR002885 Pentatricopeptide_rpt Pfam 255 280
IPR002885 Pentatricopeptide_rpt Pfam 157 183
IPR002885 Pentatricopeptide_rpt TIGRFAM 419 453
IPR002885 Pentatricopeptide_rpt TIGRFAM 283 316
IPR002885 Pentatricopeptide_rpt TIGRFAM 385 418
IPR002885 Pentatricopeptide_rpt TIGRFAM 185 210
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 183 217
IPR002885 Pentatricopeptide_rpt Pfam 281 328
IPR002885 Pentatricopeptide_rpt Pfam 381 430
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 417 447
IPR011990 TPR-like_helical_dom_sf Gene3D 237 337
IPR011990 TPR-like_helical_dom_sf Gene3D 132 236

No CAZYmes available for this sequence

No external refs found!