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  5. LOC_Os04g42010.1

LOC_Os04g42010.1


Description : La protein 1


Gene families : OG_01_0013908 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013908_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g42010.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g42010.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_167
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_180


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
CC GO:1990904 ribonucleoprotein complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom Pfam 129 183
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 112 208
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 284 400
IPR006630 La_HTH SMART 13 106
IPR045180 La_dom_prot PANTHER 287 435
IPR036390 WH_DNA-bd_sf SUPERFAMILY 10 110
IPR014886 La_xRRM Pfam 305 400
IPR036388 WH-like_DNA-bd_sf Gene3D 7 110
IPR000504 RRM_dom ProSiteProfiles 122 199
IPR014886 La_xRRM ProSiteProfiles 288 417
IPR035979 RBD_domain_sf SUPERFAMILY 120 350
IPR006630 La_HTH ProSiteProfiles 9 114
IPR006630 La_HTH Pfam 19 87
IPR002344 Lupus_La PRINTS 48 63
IPR002344 Lupus_La PRINTS 22 39
IPR002344 Lupus_La PRINTS 163 181
IPR045180 La_dom_prot PANTHER 7 254
IPR000504 RRM_dom SMART 123 195
IPR000504 RRM_dom SMART 303 370

No CAZYmes available for this sequence

No external refs found!