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  5. LOC_Os04g42600.2

LOC_Os04g42600.2


Description : poly(A) binding protein 2


Gene families : OG_01_0007205 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007205_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g42600.2
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g42600.2
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_334
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_34


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom ProSiteProfiles 39 117
IPR035979 RBD_domain_sf SUPERFAMILY 218 402
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 37 127
IPR000504 RRM_dom ProSiteProfiles 218 295
IPR045305 RRM2_I_PABPs CDD 125 201
IPR000504 RRM_dom ProSiteProfiles 127 199
IPR003954 RRM_dom_euk SMART 322 394
IPR003954 RRM_dom_euk SMART 219 291
IPR003954 RRM_dom_euk SMART 128 200
IPR003954 RRM_dom_euk SMART 40 113
IPR036053 PABP-dom SUPERFAMILY 502 652
IPR000504 RRM_dom ProSiteProfiles 321 398
IPR000504 RRM_dom Pfam 41 111
IPR000504 RRM_dom Pfam 220 288
IPR000504 RRM_dom Pfam 129 197
IPR000504 RRM_dom Pfam 323 391
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 128 200
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 303 411
IPR002004 PABP_HYD Pfam 568 632
IPR002004 PABP_HYD ProSiteProfiles 560 637
IPR002004 PABP_HYD SMART 572 635
IPR006515 PABP_1234 TIGRFAM 40 633
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 203 302
IPR000504 RRM_dom SMART 322 394
IPR000504 RRM_dom SMART 219 291
IPR000504 RRM_dom SMART 128 200
IPR000504 RRM_dom SMART 40 113
IPR035979 RBD_domain_sf SUPERFAMILY 40 208

No CAZYmes available for this sequence

No external refs found!