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  5. LOC_Os04g42840.1

LOC_Os04g42840.1


Description : CLIP-associated protein


Gene families : OG_01_0004007 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004007_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g42840.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g42840.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_269
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_123


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR021133 HEAT_type_2 ProSiteProfiles 85 123
IPR011989 ARM-like Gene3D 1219 1431
IPR000357 HEAT Pfam 162 191
IPR034085 TOG SMART 2 226
IPR034085 TOG SMART 284 515
IPR034085 TOG SMART 786 1032
IPR034085 TOG SMART 1209 1436
IPR011989 ARM-like Gene3D 1 223
IPR011989 ARM-like Gene3D 801 1023
IPR016024 ARM-type_fold SUPERFAMILY 292 1434
IPR021133 HEAT_type_2 ProSiteProfiles 162 200
IPR024395 CLASP_N_dom Pfam 287 502
IPR011989 ARM-like Gene3D 268 508
IPR016024 ARM-type_fold SUPERFAMILY 6 200

No CAZYmes available for this sequence

No external refs found!