LOC_Os04g42920.1

Description : Isocitrate/isopropylmalate dehydrogenase family protein

Gene families : OG_01_0007688 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007688_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g42920.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g42920.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_60
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_17

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0000287	magnesium ion binding	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004448	isocitrate dehydrogenase [NAD(P)+] activity	None	Extended
MF	GO:0004450	isocitrate dehydrogenase (NADP+) activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006102	isocitrate metabolic process	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	None	Extended
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0051287	NAD binding	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072350	tricarboxylic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1902652	secondary alcohol metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR019818	IsoCit/isopropylmalate_DH_CS	ProSitePatterns	335	354
IPR004790	Isocitrate_DH_NADP	PANTHER	52	477
IPR004790	Isocitrate_DH_NADP	TIGRFAM	69	473
IPR024084	IsoPropMal-DH-like_dom	Pfam	71	464
IPR024084	IsoPropMal-DH-like_dom	SMART	75	464
IPR004790	Isocitrate_DH_NADP	PIRSF	50	474

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os04g42920.1

Expression Profile

Co-expression Networks

Functional Annotation