LOC_Os04g43150.2

Description : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain

Gene families : OG_01_0011087 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011087_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g43150.2
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g43150.2
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_295
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_61

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	311	460
IPR000504	RRM_dom	Pfam	344	412
IPR032710	NTF2-like_dom_sf	SUPERFAMILY	32	152
IPR018222	Nuclear_transport_factor_2_euk	CDD	32	152
IPR000504	RRM_dom	ProSiteProfiles	342	420
IPR002075	NTF2_dom	Pfam	35	150
IPR039539	Ras_GTPase_bind_prot	PANTHER	16	462
IPR018222	Nuclear_transport_factor_2_euk	ProSiteProfiles	35	151
IPR000504	RRM_dom	SMART	343	415
IPR035979	RBD_domain_sf	SUPERFAMILY	334	446

No CAZYmes available for this sequence

External Links

No external refs found!