LOC_Os04g43922.1

Description : ribosomal RNA processing 4

Gene families : OG_01_0004412 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004412_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g43922.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g43922.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_261
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_19

Type	GO Term	Name	Evidence	Source
CC	GO:0000178	exosome (RNase complex)	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905354	exoribonuclease complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR012340	NA-bd_OB-fold	SUPERFAMILY	81	173
IPR026699	Exosome_RNA_bind1/RRP40/RRP4	PANTHER	11	306
IPR036612	KH_dom_type_1_sf	SUPERFAMILY	176	304
IPR004088	KH_dom_type_1	Pfam	176	216

No CAZYmes available for this sequence

External Links

No external refs found!