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  5. LOC_Os04g44840.1

LOC_Os04g44840.1


Description : Glycosyl hydrolase family protein


Gene families : OG_01_0000165 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000165_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g44840.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g44840.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_332
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_9


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
MF GO:0009044 xylan 1,4-beta-xylosidase activity ISM GOs from InterProScan
BP GO:0045493 xylan catabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR026891 Fn3-like Pfam 694 761
IPR036962 Glyco_hydro_3_N_sf Gene3D 50 369
IPR036881 Glyco_hydro_3_C_sf Gene3D 379 625
IPR026891 Fn3-like SMART 693 763
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 38 393
IPR001764 Glyco_hydro_3_N Pfam 106 347
IPR013783 Ig-like_fold Gene3D 664 770
IPR002772 Glyco_hydro_3_C Pfam 394 624
IPR001764 Glyco_hydro_3_N PRINTS 201 217
IPR001764 Glyco_hydro_3_N PRINTS 274 292
IPR001764 Glyco_hydro_3_N PRINTS 112 131
IPR044993 BXL PANTHER 21 769
IPR036881 Glyco_hydro_3_C_sf SUPERFAMILY 395 627
HMM Family HMM Length Query Length e-Value Query Start Query End
GH3 216 771 1.1e-67 72 321
No external refs found!