LOC_Os04g47400.1

Description : SKU5 similar 5

Gene families : OG_01_0002715 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002715_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g47400.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g47400.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_133
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_118

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	ISM	GOs from InterProScan
MF	GO:0016491	oxidoreductase activity	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011707	Cu-oxidase-like_N	Pfam	37	150
IPR045087	Cu-oxidase_fam	PANTHER	14	542
IPR001117	Cu-oxidase_2nd	Pfam	163	299
IPR008972	Cupredoxin	Gene3D	19	149
IPR008972	Cupredoxin	SUPERFAMILY	349	540
IPR008972	Cupredoxin	Gene3D	161	334
IPR034273	CuRO_1_AAO-like	CDD	32	147
IPR008972	Cupredoxin	Gene3D	347	548
IPR008972	Cupredoxin	SUPERFAMILY	26	177
IPR011706	Cu-oxidase_C	Pfam	415	520
IPR008972	Cupredoxin	SUPERFAMILY	159	338

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
AA1	358	555	3.8e-71	47	501

External Links

No external refs found!