LOC_Os04g49860.1

Description : DNA replication helicase, putative

Gene families : OG_01_0016170 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016170_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g49860.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g49860.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_199
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_111

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISM	GOs from InterProScan
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004520	DNA endonuclease activity	None	Extended
MF	GO:0004536	DNA nuclease activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016888	endodeoxyribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0017108	5'-flap endonuclease activity	ISM	GOs from InterProScan
MF	GO:0017116	single-stranded DNA helicase activity	ISM	GOs from InterProScan
BP	GO:0033567	DNA replication, Okazaki fragment processing	ISM	GOs from InterProScan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0048256	flap endonuclease activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR027417	P-loop_NTPase	Gene3D	1066	1272
IPR045055	DNA2/NAM7-like	PANTHER	167	1261
IPR041679	DNA2/NAM7-like_C	CDD	1068	1257
IPR026851	Dna2/JHS1_DEXXQ-box	PANTHER	167	1261
IPR041677	DNA2/NAM7_AAA_11	Pfam	867	958
IPR041677	DNA2/NAM7_AAA_11	Pfam	969	1035
IPR011604	PDDEXK-like_dom_sf	Gene3D	383	635
IPR014808	DNA_replication_fac_Dna2_N	Pfam	329	528
IPR041679	DNA2/NAM7-like_C	Pfam	1044	1243
IPR027417	P-loop_NTPase	SUPERFAMILY	865	1251
IPR027417	P-loop_NTPase	Gene3D	794	964
IPR027417	P-loop_NTPase	Gene3D	965	1065

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os04g49860.1

Expression Profile

Co-expression Networks

Functional Annotation