LOC_Os04g49970.1

Description : plant U-box 23

Gene families : OG_01_0022873 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0022873_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g49970.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g49970.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_312
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_130

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	ISM	GOs from InterProScan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016746	acyltransferase activity	None	Extended
MF	GO:0016755	aminoacyltransferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	ISM	GOs from InterProScan
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR045185	PUB22/23/24-like	PANTHER	4	421
IPR011989	ARM-like	Gene3D	235	401
IPR011989	ARM-like	Gene3D	89	234
IPR003613	Ubox_domain	ProSiteProfiles	4	79
IPR016024	ARM-type_fold	SUPERFAMILY	118	396
IPR003613	Ubox_domain	Pfam	6	75
IPR013083	Znf_RING/FYVE/PHD	Gene3D	1	85
IPR045210	RING-Ubox_PUB	CDD	9	52
IPR003613	Ubox_domain	SMART	8	72

No CAZYmes available for this sequence

External Links

No external refs found!