1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os04g51440.1

LOC_Os04g51440.1


Description : villin 4


Gene families : OG_01_0000277 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000277_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g51440.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g51440.1 No neighbors in network
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_204


Type GO Term Name Evidence Source
MF GO:0003779 actin binding ISM GOs from InterProScan
BP GO:0007010 cytoskeleton organization ISM GOs from InterProScan
MF GO:0051015 actin filament binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR003128 Villin_headpiece SMART 911 946
IPR036180 Gelsolin-like_dom_sf SUPERFAMILY 625 761
IPR029006 ADF-H/Gelsolin-like_dom_sf Gene3D 388 504
IPR029006 ADF-H/Gelsolin-like_dom_sf Gene3D 250 353
IPR007122 Villin/Gelsolin PRINTS 472 492
IPR007122 Villin/Gelsolin PRINTS 647 669
IPR007122 Villin/Gelsolin PRINTS 595 614
IPR007122 Villin/Gelsolin PRINTS 414 430
IPR007122 Villin/Gelsolin PRINTS 439 457
IPR007122 Villin/Gelsolin PRINTS 325 346
IPR007122 Villin/Gelsolin PRINTS 535 555
IPR036886 Villin_headpiece_dom_sf SUPERFAMILY 874 946
IPR003128 Villin_headpiece ProSiteProfiles 881 946
IPR007122 Villin/Gelsolin SMART 626 722
IPR007122 Villin/Gelsolin SMART 254 346
IPR007122 Villin/Gelsolin SMART 520 609
IPR007122 Villin/Gelsolin SMART 139 236
IPR007122 Villin/Gelsolin SMART 19 117
IPR007122 Villin/Gelsolin SMART 395 492
IPR029006 ADF-H/Gelsolin-like_dom_sf Gene3D 521 614
IPR036180 Gelsolin-like_dom_sf SUPERFAMILY 253 430
IPR003128 Villin_headpiece Pfam 911 946
IPR007122 Villin/Gelsolin PANTHER 1 946
IPR007123 Gelsolin-like_dom Pfam 152 219
IPR007123 Gelsolin-like_dom Pfam 274 339
IPR007123 Gelsolin-like_dom Pfam 28 109
IPR007123 Gelsolin-like_dom Pfam 641 715
IPR029006 ADF-H/Gelsolin-like_dom_sf Gene3D 6 132
IPR029006 ADF-H/Gelsolin-like_dom_sf Gene3D 133 249
IPR036886 Villin_headpiece_dom_sf Gene3D 869 946
IPR029006 ADF-H/Gelsolin-like_dom_sf Gene3D 615 738

No CAZYmes available for this sequence

No external refs found!