1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os04g51450.1

LOC_Os04g51450.1


Description : xyloglucan endotransglucosylase/hydrolase 25


Gene families : OG_01_0038938 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0038938_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g51450.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g51450.1 No neighbors in network
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_159


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
CC GO:0005618 cell wall ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
BP GO:0006073 obsolete cellular glucan metabolic process ISM GOs from InterProScan
BP GO:0010411 xyloglucan metabolic process ISM GOs from InterProScan
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity ISM GOs from InterProScan
BP GO:0042546 cell wall biogenesis ISM GOs from InterProScan
CC GO:0048046 apoplast ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000757 GH16 ProSiteProfiles 51 248
IPR010713 XET_C Pfam 271 316
IPR013320 ConA-like_dom_sf SUPERFAMILY 73 317
IPR000757 GH16 Pfam 60 240
IPR044791 Beta-glucanase/XTH PANTHER 32 319
IPR016455 XTH CDD 52 316
IPR008263 GH16_AS ProSitePatterns 134 144
IPR016455 XTH PIRSF 24 319

No CAZYmes available for this sequence

No external refs found!