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Description : nucleotide binding;nucleic acid binding;RNA binding
Gene families : OG_01_0002713 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002713_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g52200.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g52200.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_60 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_49 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | ISM | GOs from InterProScan |
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 775 | 880 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 553 | 652 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 18 | 153 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 333 | 482 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 662 | 774 |
| IPR034423 | RBM19_RRM5 | CDD | 682 | 763 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 22 | 115 |
| IPR000504 | RRM_dom | SMART | 24 | 96 |
| IPR000504 | RRM_dom | SMART | 371 | 443 |
| IPR000504 | RRM_dom | SMART | 683 | 761 |
| IPR000504 | RRM_dom | SMART | 782 | 853 |
| IPR000504 | RRM_dom | SMART | 563 | 630 |
| IPR000504 | RRM_dom | ProSiteProfiles | 781 | 857 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 774 | 859 |
| IPR003954 | RRM_dom_euk | SMART | 683 | 761 |
| IPR003954 | RRM_dom_euk | SMART | 782 | 853 |
| IPR003954 | RRM_dom_euk | SMART | 24 | 96 |
| IPR000504 | RRM_dom | ProSiteProfiles | 682 | 765 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 673 | 770 |
| IPR000504 | RRM_dom | ProSiteProfiles | 23 | 100 |
| IPR000504 | RRM_dom | ProSiteProfiles | 562 | 634 |
| IPR000504 | RRM_dom | ProSiteProfiles | 370 | 447 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 371 | 633 |
| IPR000504 | RRM_dom | Pfam | 564 | 626 |
| IPR000504 | RRM_dom | Pfam | 376 | 440 |
| IPR000504 | RRM_dom | Pfam | 783 | 850 |
| IPR000504 | RRM_dom | Pfam | 25 | 93 |
| IPR000504 | RRM_dom | Pfam | 684 | 758 |
No CAZYmes available for this sequence
| No external refs found! |