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  5. LOC_Os04g53310.1

LOC_Os04g53310.1


Description : starch synthase 3


Gene families : OG_01_0007085 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007085_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g53310.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g53310.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_241
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_69


Type GO Term Name Evidence Source
MF GO:0004373 glycogen (starch) synthase activity ISM GOs from InterProScan
MF GO:0016757 glycosyltransferase activity ISM GOs from InterProScan
MF GO:2001070 starch binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR005085 CBM25 SMART 670 759
IPR005085 CBM25 SMART 333 418
IPR005085 CBM25 SMART 508 599
IPR011835 GS/SS Hamap 768 1213
IPR013783 Ig-like_fold Gene3D 668 764
IPR005085 CBM25 Pfam 511 597
IPR005085 CBM25 Pfam 338 416
IPR005085 CBM25 Pfam 673 758
IPR001296 Glyco_trans_1 Pfam 1016 1138
IPR013534 Starch_synth_cat_dom Pfam 769 955
IPR013783 Ig-like_fold Gene3D 336 427
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM53 87 1217 2.5e-33 508 598
GT5 472 1217 1e-138 769 1211
No external refs found!