LOC_Os04g53540.3

Description : protodermal factor 2

Gene families : OG_01_0001282 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001282_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g53540.3
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g53540.3
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_171
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_32

Type	GO Term	Name	Evidence	Source
MF	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003700	DNA-binding transcription factor activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008289	lipid binding	ISM	GOs from InterProScan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR017970	Homeobox_CS	ProSitePatterns	137	160
IPR001356	Homeobox_dom	ProSiteProfiles	102	162
IPR009057	Homeobox-like_sf	SUPERFAMILY	92	162
IPR001356	Homeobox_dom	SMART	103	166
IPR023393	START-like_dom_sf	Gene3D	350	519
IPR002913	START_lipid-bd_dom	Pfam	296	520
IPR002913	START_lipid-bd_dom	ProSiteProfiles	286	523
IPR002913	START_lipid-bd_dom	SMART	295	520
IPR001356	Homeobox_dom	CDD	104	163
IPR001356	Homeobox_dom	Pfam	105	160
IPR042160	GLABRA2/ANL2/PDF2/ATML1-like	PANTHER	43	780

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os04g53540.3

Expression Profile

Co-expression Networks

Functional Annotation