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  5. LOC_Os04g54400.1

LOC_Os04g54400.1


Description : Phototropic-responsive NPH3 family protein


Gene families : OG_01_0017393 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017393_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g54400.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g54400.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_19
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_113


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011333 SKP1/BTB/POZ_sf SUPERFAMILY 21 120
IPR027356 NPH3_dom Pfam 219 481
IPR011333 SKP1/BTB/POZ_sf Gene3D 24 141
IPR043454 NPH3/RPT2-like PANTHER 6 640
IPR000210 BTB/POZ_dom Pfam 29 119
IPR027356 NPH3_dom ProSiteProfiles 219 505
IPR000210 BTB/POZ_dom SMART 31 140
IPR000210 BTB/POZ_dom ProSiteProfiles 31 103

No CAZYmes available for this sequence

No external refs found!