LOC_Os04g54500.1

Description : polymerase gamma 2

Gene families : OG_01_0001143 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001143_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g54500.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g54500.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_320
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_131

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003887	DNA-directed DNA polymerase activity	ISM	GOs from InterProScan
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004527	exonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	ISM	GOs from InterProScan
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	ISM	GOs from InterProScan
BP	GO:0006261	DNA-templated DNA replication	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008408	3'-5' exonuclease activity	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0034061	DNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002298	DNA_polymerase_A	PANTHER	1	691
IPR002562	3'-5'_exonuclease_dom	Pfam	4	142
IPR001098	DNA-dir_DNA_pol_A_palm_dom	SMART	421	651
IPR002298	DNA_polymerase_A	PRINTS	463	476
IPR002298	DNA_polymerase_A	PRINTS	388	410
IPR002298	DNA_polymerase_A	PRINTS	433	456
IPR002298	DNA_polymerase_A	PRINTS	604	620
IPR002298	DNA_polymerase_A	PRINTS	411	426
IPR002298	DNA_polymerase_A	PRINTS	634	647
IPR036397	RNaseH_sf	Gene3D	1	175
IPR012337	RNaseH-like_sf	SUPERFAMILY	2	143
IPR043502	DNA/RNA_pol_sf	SUPERFAMILY	156	691
IPR001098	DNA-dir_DNA_pol_A_palm_dom	Pfam	357	688

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os04g54500.1

Expression Profile

Co-expression Networks

Functional Annotation