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  5. LOC_Os04g54810.1

LOC_Os04g54810.1


Description : beta-D-xylosidase 4


Gene families : OG_01_0014099 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014099_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g54810.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g54810.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_289
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_8


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
MF GO:0009044 xylan 1,4-beta-xylosidase activity ISM GOs from InterProScan
BP GO:0045493 xylan catabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036881 Glyco_hydro_3_C_sf Gene3D 385 630
IPR013783 Ig-like_fold Gene3D 657 765
IPR001764 Glyco_hydro_3_N PRINTS 279 297
IPR001764 Glyco_hydro_3_N PRINTS 116 135
IPR001764 Glyco_hydro_3_N PRINTS 205 221
IPR001764 Glyco_hydro_3_N Pfam 111 352
IPR026891 Fn3-like SMART 689 758
IPR044993 BXL PANTHER 16 765
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 45 398
IPR036881 Glyco_hydro_3_C_sf SUPERFAMILY 399 632
IPR026891 Fn3-like Pfam 689 756
IPR036962 Glyco_hydro_3_N_sf Gene3D 55 371
IPR002772 Glyco_hydro_3_C Pfam 399 629
HMM Family HMM Length Query Length e-Value Query Start Query End
GH3 216 766 3.7e-70 78 326
No external refs found!