LOC_Os04g54840.1

Description : nuclear RNA polymerase D2A

Gene families : OG_01_0003765 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003765_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g54840.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g54840.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_335
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_584

Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
MF	GO:0032549	ribonucleoside binding	ISM	GOs from InterProScan
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR015712	DNA-dir_RNA_pol_su2	PANTHER	54	1249
IPR015712	DNA-dir_RNA_pol_su2	CDD	100	1248
IPR007121	RNA_pol_bsu_CS	ProSitePatterns	1002	1014
IPR037033	DNA-dir_RNAP_su2_hyb_sf	Gene3D	777	1135
IPR007644	RNA_pol_bsu_protrusion	Pfam	99	488
IPR007645	RNA_pol_Rpb2_3	Pfam	528	590
IPR007647	RNA_pol_Rpb2_5	Pfam	700	767
IPR007641	RNA_pol_Rpb2_7	Pfam	1151	1249
IPR014724	RNA_pol_RPB2_OB-fold	Gene3D	807	998
IPR007120	DNA-dir_RNAP_su2_dom	Pfam	777	1149
IPR007646	RNA_pol_Rpb2_4	Pfam	624	685
IPR007642	RNA_pol_Rpb2_2	Pfam	316	451
IPR037034	RNA_pol_Rpb2_2_sf	Gene3D	286	438

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os04g54840.1

Expression Profile

Co-expression Networks

Functional Annotation