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  5. LOC_Os04g54930.1

LOC_Os04g54930.1


Description : ATP binding cassette subfamily B19


Gene families : OG_01_0001065 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001065_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g54930.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g54930.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_161
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_76


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding ISM GOs from InterProScan
BP GO:0055085 transmembrane transport ISM GOs from InterProScan
MF GO:0140359 ABC-type transporter activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036640 ABC1_TM_sf Gene3D 43 369
IPR036640 ABC1_TM_sf SUPERFAMILY 44 531
IPR003439 ABC_transporter-like_ATP-bd Pfam 400 547
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 380 616
IPR011527 ABC1_TM_dom ProSiteProfiles 57 345
IPR011527 ABC1_TM_dom Pfam 61 330
IPR003593 AAA+_ATPase SMART 407 599
IPR017871 ABC_transporter-like_CS ProSitePatterns 519 533
IPR027417 P-loop_NTPase Gene3D 370 609
IPR039421 Type_1_exporter PANTHER 28 611
IPR027417 P-loop_NTPase SUPERFAMILY 370 608

No CAZYmes available for this sequence

No external refs found!