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  5. LOC_Os04g55090.1

LOC_Os04g55090.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0016007 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016007_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g55090.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g55090.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_327
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_1


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 305 360
IPR011990 TPR-like_helical_dom_sf Gene3D 330 421
IPR011990 TPR-like_helical_dom_sf Gene3D 28 227
IPR011990 TPR-like_helical_dom_sf Gene3D 229 329
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 246 280
IPR002885 Pentatricopeptide_rpt TIGRFAM 284 317
IPR002885 Pentatricopeptide_rpt TIGRFAM 213 246
IPR002885 Pentatricopeptide_rpt TIGRFAM 248 282
IPR002885 Pentatricopeptide_rpt TIGRFAM 386 417
IPR002885 Pentatricopeptide_rpt Pfam 214 242
IPR002885 Pentatricopeptide_rpt Pfam 386 415
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 211 245
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 281 315
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 383 417
IPR002885 Pentatricopeptide_rpt Pfam 246 294

No CAZYmes available for this sequence

No external refs found!