LOC_Os04g55560.2

Description : Integrase-type DNA-binding superfamily protein

Gene families : OG_01_0000171 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000171_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g55560.2
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g55560.2
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_364
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_150

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003700	DNA-binding transcription factor activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036955	AP2/ERF_dom_sf	Gene3D	110	168
IPR036955	AP2/ERF_dom_sf	Gene3D	202	261
IPR016177	DNA-bd_dom_sf	SUPERFAMILY	110	168
IPR001471	AP2/ERF_dom	SMART	203	266
IPR001471	AP2/ERF_dom	SMART	111	173
IPR001471	AP2/ERF_dom	ProSiteProfiles	203	260
IPR001471	AP2/ERF_dom	Pfam	111	159
IPR001471	AP2/ERF_dom	Pfam	202	251
IPR001471	AP2/ERF_dom	ProSiteProfiles	111	167
IPR016177	DNA-bd_dom_sf	SUPERFAMILY	202	262
IPR001471	AP2/ERF_dom	CDD	202	262

No CAZYmes available for this sequence

External Links

No external refs found!