LOC_Os04g55720.1

Description : D-3-phosphoglycerate dehydrogenase

Gene families : OG_01_0000626 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000626_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g55720.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g55720.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_14
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_139

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004617	phosphoglycerate dehydrogenase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006563	L-serine metabolic process	None	Extended
BP	GO:0006564	L-serine biosynthetic process	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	amino acid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009069	serine family amino acid metabolic process	None	Extended
BP	GO:0009070	serine family amino acid biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	None	Extended
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
MF	GO:0051287	NAD binding	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR045865	ACT-like_dom_sf	SUPERFAMILY	531	609
IPR036291	NAD(P)-bd_dom_sf	SUPERFAMILY	170	352
IPR006311	TAT_signal	ProSiteProfiles	1	67
IPR002912	ACT_dom	ProSiteProfiles	541	613
IPR015878	Ado_hCys_hydrolase_NAD-bd	SMART	201	355
IPR029752	D-isomer_DH_CS1	ProSitePatterns	213	240
IPR029009	ASB_dom_sf	Gene3D	388	539
IPR029009	ASB_dom_sf	SUPERFAMILY	389	535
IPR002912	ACT_dom	Pfam	542	602
IPR006236	PGDH	TIGRFAM	74	612
IPR006140	D-isomer_DH_NAD-bd	Pfam	176	351
IPR029753	D-isomer_DH_CS	ProSitePatterns	290	306
IPR045626	PGDH_ASB_dom	Pfam	395	496
IPR006139	D-isomer_2_OHA_DH_cat_dom	Pfam	74	383
IPR029753	D-isomer_DH_CS	ProSitePatterns	261	283

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os04g55720.1

Expression Profile

Co-expression Networks

Functional Annotation