Sevir.4G198200.1

Description : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

Gene families : OG_01_0005334 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005334_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.4G198200.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.4G198200.1	No neighbors in network
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_158

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003347	JmjC_dom	Pfam	384	500
IPR003888	FYrich_N	ProSiteProfiles	1043	1101
IPR003349	JmjN	SMART	158	199
IPR003888	FYrich_N	Pfam	1055	1098
IPR003889	FYrich_C	ProSiteProfiles	1103	1193
IPR003889	FYrich_C	Pfam	1105	1193
IPR003347	JmjC_dom	ProSiteProfiles	351	517
IPR003347	JmjC_dom	SMART	351	517
IPR003888	FYrich_N	SMART	1057	1101
IPR004198	Znf_C5HC2	Pfam	606	656
IPR003349	JmjN	ProSiteProfiles	159	200
IPR003349	JmjN	Pfam	160	193
IPR003889	FYrich_C	SMART	1107	1210

No CAZYmes available for this sequence

External Links

No external refs found!