LOC_Os04g57730.1

Description : uracil dna glycosylase

Gene families : OG_01_0012876 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012876_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g57730.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g57730.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_328
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_488

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004844	uracil DNA N-glycosylase activity	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006284	base-excision repair	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	ISM	GOs from InterProScan
MF	GO:0019104	DNA N-glycosylase activity	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097506	deaminated base DNA N-glycosylase activity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR018085	Ura-DNA_Glyclase_AS	ProSitePatterns	139	148
IPR036895	Uracil-DNA_glycosylase-like_sf	SUPERFAMILY	82	303
IPR002043	UDG_fam1	CDD	100	301
IPR002043	UDG_fam1	TIGRFAM	86	293
IPR002043	UDG_fam1	Hamap	85	302
IPR005122	Uracil-DNA_glycosylase-like	Pfam	137	292
IPR002043	UDG_fam1	PANTHER	37	303
IPR005122	Uracil-DNA_glycosylase-like	SMART	131	291
IPR036895	Uracil-DNA_glycosylase-like_sf	Gene3D	66	303

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os04g57730.1

Expression Profile

Co-expression Networks

Functional Annotation