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  5. LOC_Os04g57860.1

LOC_Os04g57860.1


Description : glycosyl hydrolase 9C1


Gene families : OG_01_0000225 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000225_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g57860.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g57860.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_4
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_6


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
MF GO:0030246 carbohydrate binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR033126 Glyco_hydro_9_Asp/Glu_AS ProSitePatterns 477 495
IPR012341 6hp_glycosidase-like_sf Gene3D 34 517
IPR019028 CBM_49 SMART 531 611
IPR001701 Glyco_hydro_9 Pfam 39 500
IPR008928 6-hairpin_glycosidase_sf SUPERFAMILY 36 517
IPR019028 CBM_49 Pfam 532 610
IPR018221 Glyco_hydro_9_His_AS ProSitePatterns 403 429
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM49 78 626 2.2e-30 531 610
GH9 418 626 1.4e-139 38 502
No external refs found!