LOC_Os04g57940.1

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0016683 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016683_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os04g57940.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os04g57940.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_191
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_83

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	Pfam	78	105
IPR002885	Pentatricopeptide_rpt	Pfam	384	409
IPR002885	Pentatricopeptide_rpt	Pfam	283	309
IPR002885	Pentatricopeptide_rpt	Pfam	107	137
IPR002885	Pentatricopeptide_rpt	Pfam	487	508
IPR011990	TPR-like_helical_dom_sf	Gene3D	259	368
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	309	343
IPR045215	PPR_prot_At1g15510	PANTHER	38	515
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	105	139
IPR002885	Pentatricopeptide_rpt	TIGRFAM	412	445
IPR002885	Pentatricopeptide_rpt	TIGRFAM	384	411
IPR002885	Pentatricopeptide_rpt	TIGRFAM	107	141
IPR002885	Pentatricopeptide_rpt	Pfam	410	456
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	410	444
IPR011990	TPR-like_helical_dom_sf	Gene3D	384	516
IPR011990	TPR-like_helical_dom_sf	Gene3D	156	258
IPR011990	TPR-like_helical_dom_sf	Gene3D	15	155

No CAZYmes available for this sequence

External Links

No external refs found!