LOC_Os05g01180.1

Description : zinc knuckle (CCHC-type) family protein

Gene families : OG_01_0004398 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004398_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g01180.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g01180.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_140
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_67

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR025558	DUF4283	Pfam	133	264
IPR001878	Znf_CCHC	ProSiteProfiles	61	76
IPR036875	Znf_CCHC_sf	SUPERFAMILY	50	95
IPR001878	Znf_CCHC	SMART	79	95
IPR001878	Znf_CCHC	SMART	60	76

No CAZYmes available for this sequence

External Links

No external refs found!