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  5. LOC_Os05g01230.1

LOC_Os05g01230.1


Description : Zinc finger (C3HC4-type RING finger) family protein


Gene families : OG_01_0007212 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007212_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g01230.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g01230.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_175
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_216


Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR019787 Znf_PHD-finger ProSiteProfiles 9 60
IPR036987 SRA-YDG_sf Gene3D 246 425
IPR015947 PUA-like_sf SUPERFAMILY 237 430
IPR003105 SRA_YDG ProSiteProfiles 262 411
IPR003105 SRA_YDG SMART 257 415
IPR001841 Znf_RING ProSiteProfiles 505 561
IPR013083 Znf_RING/FYVE/PHD Gene3D 88 202
IPR001841 Znf_RING SMART 12 57
IPR001841 Znf_RING SMART 505 561
IPR001841 Znf_RING SMART 134 172
IPR017907 Znf_RING_CS ProSitePatterns 520 529
IPR019786 Zinc_finger_PHD-type_CS ProSitePatterns 12 57
IPR001965 Znf_PHD SMART 11 58
IPR013083 Znf_RING/FYVE/PHD Gene3D 491 607
IPR045134 UHRF1/2-like PANTHER 2 788
IPR027370 Znf-RING_euk Pfam 505 537
IPR018957 Znf_C3HC4_RING-type Pfam 134 172
IPR011011 Znf_FYVE_PHD SUPERFAMILY 3 60
IPR013083 Znf_RING/FYVE/PHD Gene3D 8 64
IPR001841 Znf_RING ProSiteProfiles 134 173
IPR003105 SRA_YDG Pfam 266 414

No CAZYmes available for this sequence

No external refs found!