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Description : pumilio 1
Gene families : OG_01_0007041 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007041_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g01910.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g01910.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_270 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_128 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 726 | 761 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 549 | 583 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 766 | 800 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 586 | 619 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 812 | 839 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 621 | 654 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 731 | 764 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 693 | 728 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 663 | 687 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 726 | 761 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 689 | 724 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 617 | 652 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 581 | 616 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 762 | 797 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 545 | 580 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 653 | 688 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 804 | 839 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 581 | 616 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 798 | 839 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 617 | 652 |
| IPR016024 | ARM-type_fold | SUPERFAMILY | 526 | 862 |
| IPR033712 | Pumilio_RNA-bd | CDD | 540 | 861 |
| IPR012940 | NABP | Pfam | 217 | 345 |
| IPR012940 | NABP | Pfam | 322 | 544 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 545 | 580 |
| IPR011989 | ARM-like | Gene3D | 526 | 871 |
| IPR033133 | PUM-HD | ProSiteProfiles | 525 | 865 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 653 | 688 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 762 | 797 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 689 | 725 |
No CAZYmes available for this sequence
| No external refs found! |