LOC_Os05g03884.1

Description : KNOTTED1-like homeobox gene 6

Gene families : OG_01_0005094 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005094_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g03884.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g03884.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_56
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_18

Type	GO Term	Name	Evidence	Source
MF	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003700	DNA-binding transcription factor activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR005541	KNOX2	Pfam	108	154
IPR001356	Homeobox_dom	SMART	219	284
IPR005539	ELK_dom	SMART	197	218
IPR005539	ELK_dom	ProSiteProfiles	197	217
IPR009057	Homeobox-like_sf	SUPERFAMILY	219	288
IPR005539	ELK_dom	Pfam	197	218
IPR001356	Homeobox_dom	CDD	229	281
IPR001356	Homeobox_dom	ProSiteProfiles	217	280
IPR017970	Homeobox_CS	ProSitePatterns	255	278
IPR005540	KNOX1	Pfam	55	94
IPR005540	KNOX1	SMART	53	97
IPR008422	Homeobox_KN_domain	Pfam	237	276
IPR005541	KNOX2	SMART	104	155

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os05g03884.1

Expression Profile

Co-expression Networks

Functional Annotation