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  5. LOC_Os05g04850.1

LOC_Os05g04850.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0008761 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008761_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g04850.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g04850.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_283
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_19


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0003729 mRNA binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
CC GO:0005737 cytoplasm ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR033744 RRM_RBM8 CDD 95 182
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 51 195
IPR000504 RRM_dom ProSiteProfiles 101 179
IPR008111 RNA-bd_8 PANTHER 1 204
IPR000504 RRM_dom SMART 102 175
IPR000504 RRM_dom Pfam 103 168
IPR008111 RNA-bd_8 PRINTS 52 64
IPR008111 RNA-bd_8 PRINTS 166 178
IPR008111 RNA-bd_8 PRINTS 148 164
IPR035979 RBD_domain_sf SUPERFAMILY 94 202

No CAZYmes available for this sequence

No external refs found!