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  5. LOC_Os05g05460.1

LOC_Os05g05460.1


Description : Calcium-binding EF-hand family protein


Gene families : OG_01_0009522 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009522_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g05460.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g05460.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_450
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_1


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002048 EF_hand_dom ProSiteProfiles 73 108
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 86 98
IPR002048 EF_hand_dom CDD 167 227
IPR002048 EF_hand_dom ProSiteProfiles 163 198
IPR002048 EF_hand_dom Pfam 209 227
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 214 226
IPR002048 EF_hand_dom CDD 78 135
IPR011992 EF-hand-dom_pair SUPERFAMILY 72 229
IPR002048 EF_hand_dom Pfam 77 137
IPR002048 EF_hand_dom SMART 167 195
IPR002048 EF_hand_dom SMART 77 105
IPR002048 EF_hand_dom SMART 205 233

No CAZYmes available for this sequence

No external refs found!