LOC_Os05g05860.1

Description : RNA polymerase II large subunit

Gene families : OG_01_0007077 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007077_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os05g05860.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os05g05860.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_14
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_67

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0006366	transcription by RNA polymerase II	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1752	1758
IPR006592	RNA_pol_N	SMART	280	586
IPR000722	RNA_pol_asu	Pfam	390	558
IPR007075	RNA_pol_Rpb1_6	Pfam	929	1113
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1745	1751
IPR007081	RNA_pol_Rpb1_5	Pfam	863	1453
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1759	1765
IPR038120	Rpb1_funnel_sf	Gene3D	724	842
IPR007073	RNA_pol_Rpb1_7	Pfam	1198	1332
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1690	1696
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1780	1786
IPR044893	RNA_pol_Rpb1_clamp_domain	Gene3D	5	165
IPR042102	RNA_pol_Rpb1_3_sf	Gene3D	566	719
IPR007080	RNA_pol_Rpb1_1	Pfam	66	388
IPR007066	RNA_pol_Rpb1_3	Pfam	562	725
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1801	1807
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1794	1800
IPR007083	RNA_pol_Rpb1_4	Pfam	751	856
IPR045867	DNA-dir_RpoC_beta_prime	PANTHER	4	1591
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1836	1842
IPR038593	RNA_pol_Rpb1_7_sf	Gene3D	1198	1333
IPR044893	RNA_pol_Rpb1_clamp_domain	Gene3D	305	353
IPR000684	RNA_pol_II_repeat_euk	ProSitePatterns	1766	1772

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os05g05860.1

Expression Profile

Co-expression Networks

Functional Annotation